PAÜ .:. Eğitim Öğretim Bilgi Sistemi

COURSE INFORMATION

Course Code	Course Title	L+P Hour	Semester	ECTS
BIO 512	BIOINFORMATICS	3 + 0	2nd Semester	7,5

COURSE DESCRIPTION

Course Level	Master's Degree
Course Type	Elective
Course Objective	Basic knowledge of the all key areas of bioinformatics including biological databases, sequence alignment, gene and promoter prediction, molecular phylogenetics, structural bioinformatics, genomics, and proteomics.
Course Content	Introduction to Biological Systems, Biological Sequence Databases, Sequence Comparisons and Sequence-Based Database Searches, Structural bioinformatics, The Decoding of Eukaryotic Genomes, Protein Structures and Structure-Based applications, Systems Biology: The Functional Analysis of Genomes, Comparative Genome Analyses, Genomics and proteomics applications, Molecular phylogenetics, Gene and promoter prediction.
Prerequisites	No the prerequisite of lesson.
Corequisite	No the corequisite of lesson.
Mode of Delivery	Face to Face

COURSE LEARNING OUTCOMES

1	Will be able to know Biological Sequence Databases
2	Will be able to do Sequence Comparisons and Sequence
3	Will be able to know Structural bioinformatics
4	Will be able to decode Eukaryotic Genomes
5	Will be able to know Protein Structures and Structure-Based applications
6	Will be able to carry out Systems Biology: The Functional Analysis of Genomes
7	Will be able o know Comparative Genome Analyses

COURSE'S CONTRIBUTION TO PROGRAM

	PO 01	PO 02	PO 03	PO 04	PO 05	PO 06	PO 07	PO 08	PO 09	PO 10	PO 11
LO 001	4	4	3	3				5	4
LO 002	4	5	4	4		4	4	4	5
LO 003	3	4	5	5	5		5	4		5	5
LO 004	5	5	4	5	5		5		5	5	5
LO 005	3	4	5	5	5			5	5		5
LO 006
LO 007
Sub Total	19	22	21	22	15	4	14	18	19	10	15
Contribution	3	3	3	3	2	1	2	3	3	1	2

ECTS ALLOCATED BASED ON STUDENT WORKLOAD BY THE COURSE DESCRIPTION

Activities	Quantity	Duration (Hour)	Total Work Load (Hour)
Course Duration (14 weeks/theoric+practical)	14	3	42
Hours for off-the-classroom study (Pre-study, practice)	14	7	98
Assignments	1	5	5
Mid-terms	1	15	15
Final examination	1	35	35
Total Work Load ECTS Credit of the Course			195 7,5

COURSE DETAILS

Select Year

Course Details

Course Code	Course Title	L+P Hour	Course Code	Language Of Instruction	Course Semester
BIO 512	BIOINFORMATICS	3 + 0	1	Turkish	2022-2023 Spring

Course Coordinator	E-Mail	Phone Number	Course Location	Attendance
Asts. Prof. Dr. CANER VURAL	canerv@pau.edu.tr		FEN B0318	%70

Goals		Basic knowledge of the all key areas of bioinformatics including biological databases, sequence alignment, gene and promoter prediction, molecular phylogenetics, structural bioinformatics, genomics, and proteomics.
Content		Introduction to Biological Systems, Biological Sequence Databases, Sequence Comparisons and Sequence-Based Database Searches, Structural bioinformatics, The Decoding of Eukaryotic Genomes, Protein Structures and Structure-Based applications, Systems Biology: The Functional Analysis of Genomes, Comparative Genome Analyses, Genomics and proteomics applications, Molecular phylogenetics, Gene and promoter prediction.

Topics

Weeks	Topics
1	Introduction to Bioinformatics: Fundamentals and History of Bioinformatics
2	DNA Sequence Editing and Assembly of Genes
3	Biological Databases 1
4	Biological Databases 2
5	Sequence Comparisons and Searching the Sequence-based Databases
6	Binary Alignment, Multiple Alignment, and BLAST
7	Primer Designing
8	Protein Structures and Structure-Based Rational Drug Design
9	Phylogenetic Analysis of Molecular Sequence Data
10	Sequence-Based Classification and Identification of Prokaryotes
11	Functional Analysis of Genomes 1
12	Functional Analysis of Genomes 2
13	Comparative Genome Analyzes
14	Comparative Metabolic Analyzes

Materials

Materials are not specified.

Resources

Course Assessment

Assesment Methods	Percentage (%)	Assesment Methods Title
Final Exam	50	Final Exam
Midterm Exam	50	Midterm Exam

L+P: Lecture and Practice
PQ: Program Learning Outcomes
LO: Course Learning Outcomes

Prospective Student